Grandlethalgm

I have a strange issue I'm not entirely sure how to fix. I merged servers on my account to be able to start a new game in the Silver Server. So I did the merge and had the Silver server completely empty and able to be used. But once I get in I'm at the very beginning and I have 3 Pokemon. I get to the point where I can get my starter and it doesn't let me because it says I already have a Pokemon. And when I try to leave it tells me that "The Eevee" looks interesting to trigger the Jackson fight. But Eevee isn't there cause I haven't gotten my starter yet. I'm not sure what caused this or if it can be fixed but I was hoping someone would be able to give me a little insight.